Projects
- BIS
Unité de Bioinformatique Structurale
Nilges group- bis-public
BIS public SVN tree
svn co https://projets.pasteur.fr/svn/bis-public
cd bis-public
svn ...
- BiblioList
BiblioList, a litterature manager for annotated organims.
This project is closed. Not maintained nor developed anymore. - BioMaj @ Pasteur
BioMAJ (BIOlogie Mises A Jour) is a workflow engine dedicated to biological bank management. The Software automates the update cycle and the supervision of the locally mirrored bank repository.
- bneron
Bertrand bioinformatics small projects
- blast2usa
blast2usa is a script which parse a blast report to extract databank and sequence identifiers of the hsp.
The list of identifiers is formatted in USA formatblast2usa is not maintained any longer, it is superseded by blas2seqids (https://github.com/bneron/blast2seqids)....
- extend-align
extend-align has been moved to https://github.com/bneron/extend-align
- fasta-rename
Parse a file with fasta sequences.
Replace the identifier of a fasta sequences by a short identifier and generate a file with renamed fasta sequences and a file of mapping. - reorder-align
reorder an alignment file in fasta format according to
a reference sequences file containing the same sequences in fasta format.reorder-align has been moved to
https://github.com/bneron/reorder-align
- CIF
cif (for Cut In Frame) is a tool that works with DNA sequences. It is used to digest your sequences with a pool of restriction enzymes and to search which enzymes cut your sequence keeping your reading frame after ligation without any frame shift produced due to the digestion....
- Access to CLC Main WorkBench site license
Information and procedure to obtain an access to the CLC Main WorkBench license server
- biodocs schema
describe the garmmar of biodocs files using pykwalify
(use our fork of pykwalify version https://github.com/bneron/pykwalify use branch pasteur) - Golden
Projet de refonte de l'outil d'indexation des banques de données et de recherche d'information dans ces mêmes banques.
- GraphPad
comment obtenir une licence GraphPad
- Modules
Modules: pourquoi, comment, utilisation
- Python at pasteur
to host forum about the using of python in bioinformatics
- Eliane
test
- File EXchange service (F*EX)
File EXchange service (F*EX) is about sharing data with the outside world.
- LaboratoryResource
Spécification d'un modèle pour la gestion de données expérimentales.(NO-LIMS)
Info sur LabRes - Migra
Application web pour les demandes de séquençages et l'administration des feuilles de route pour les séquenceurs de la plate-forme Génomique (PF1) de Pasteur.
- Mobyle
The Mobyle project is now considered a legacy project and the code, although still available, will no longer maintained after december 31st, 2016.¶
Mobyle is a framework and web portal specifically aimed at the integration of bioinformatics software and databanks....
- Mobyle Opal
Conversion tool between Mobyle and the Opal Toolkit ((http://www.nbcr.net/software/opal/).
Mobyle provide web interface based on an XML description.
Opal provides web services based on an other xml description.
The tool is in charge of the conversion between those formats... - Pasteur Viewers
This project stores the Mobyle Viewer components distributed by the Institut Pasteur that can be plugged into the Mobyle system.
- PathoSeqWebApplication Web : Gestion des séquençages pour la plate-forme "Génotypage des Pathogènes et Santé Publique" (PF8) en relation avec les CNR de l'Institut Pasteur.
- RAP - R at Pasteur
organiser les ressources autour du logiciel R pour un groupe d'utilisateurs sur le campus
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